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last update
Oct 6th, 2007
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DBAli ALERT!
06/17/08 - The DBAli database is no longer being updated.


DBAli. Tools associated to the database.
  • DBAlit! Compare your own structure to the whole PDB (temporarily not available)
  • AnnoLite: Fast annotation of a chain
  • AnnoLyze: Annotate a chain
  • ModClus: Cluster a list of chains
  • ModClus: Cluster from a chain
  • ModDom: Define domains from a chain
  • SALIGN: Get a multiple structure alignment of a list of chains
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    Multiple structure alignments.
    All multiple structure alignments from DBAli can be downloaded here (~2.5Mbytes)

    Pairwise similarities.
    Use the following form to select the table for a chain of your interest. You will be able to download two files: an SQL script to recreate the database into your own MySQL server and a plain text file of raw data.

    Chain: 

    Currently, DBAli ocupies more than 200GB of disk space and it is organized in two MySQL databases that contain a table for each PDB chain. Therefore, it can be ONLY downloaded chain by chain. If you would like to obtain the full copy of DBAli please contact us ussing the 'Suggestions' link at the bottom of the page.
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