<div style="line-height:1.7;color:#000000;font-size:14px;font-family:arial">thanks for reply.<br>But I don't think there is a independent script in Modeller to do so. It should be add something in the loop model generating steps.<br><div></div><div id="divNeteaseMailCard"></div><br><pre><br>At&nbsp;2012-03-03&nbsp;14:14:23,"Min-yi&nbsp;Shen"&nbsp;&lt;minyishen@gmail.com&gt;&nbsp;wrote:
&gt;Just&nbsp;calculate&nbsp;the&nbsp;DOPE&nbsp;score&nbsp;for&nbsp;all&nbsp;loop&nbsp;models.
&gt;
&gt;On&nbsp;Fri,&nbsp;Mar&nbsp;2,&nbsp;2012&nbsp;at&nbsp;9:15&nbsp;PM,&nbsp;albert&nbsp;&lt;leuven@yeah.net&gt;&nbsp;wrote:
&gt;&gt;&nbsp;thank&nbsp;you&nbsp;very&nbsp;much&nbsp;for&nbsp;reply.
&gt;&gt;&nbsp;but&nbsp;in&nbsp;the&nbsp;loop&nbsp;model&nbsp;protocol,&nbsp;it&nbsp;always&nbsp;use&nbsp;PDF&nbsp;for&nbsp;scoring.&nbsp;How&nbsp;can&nbsp;I&nbsp;use
&gt;&gt;&nbsp;DOPE&nbsp;score&nbsp;for&nbsp;loop&nbsp;model&nbsp;assessment?
&gt;&gt;
&gt;&gt;&nbsp;THX
&gt;&gt;&nbsp;At&nbsp;2012-03-03&nbsp;02:23:03,"Modeller&nbsp;Caretaker"&nbsp;&lt;modeller-care@salilab.org&gt;
&gt;&gt;&nbsp;wrote:
&gt;&gt;&gt;On&nbsp;3/2/12&nbsp;9:59&nbsp;AM,&nbsp;albert&nbsp;wrote:
&gt;&gt;&gt;&gt;&nbsp;As&nbsp;far&nbsp;as&nbsp;we&nbsp;know&nbsp;the&nbsp;lower&nbsp;DOPE&nbsp;score,&nbsp;the&nbsp;better&nbsp;model.&nbsp;I&nbsp;am&nbsp;wondering
&gt;&gt;&gt;&gt;&nbsp;how&nbsp;about&nbsp;the&nbsp;PDF&nbsp;score?&nbsp;also&nbsp;the&nbsp;lower&nbsp;score,&nbsp;the&nbsp;better&nbsp;model?&nbsp;eg:
&gt;&gt;&gt;&gt;&nbsp;model&nbsp;A&nbsp;PDF=200&nbsp;is&nbsp;better&nbsp;than&nbsp;model&nbsp;B&nbsp;PDF&nbsp;score=300.
&gt;&gt;&gt;
&gt;&gt;&gt;The&nbsp;molecular&nbsp;PDF&nbsp;is&nbsp;simply&nbsp;the&nbsp;sum&nbsp;of&nbsp;restraint&nbsp;violations.&nbsp;So&nbsp;the
&gt;&gt;&gt;lower&nbsp;the&nbsp;PDF,&nbsp;the&nbsp;less&nbsp;the&nbsp;restraints&nbsp;are&nbsp;violated.&nbsp;This&nbsp;typically
&gt;&gt;&gt;means&nbsp;a&nbsp;good&nbsp;model,&nbsp;assuming&nbsp;that&nbsp;the&nbsp;restraints&nbsp;are&nbsp;an&nbsp;accurate
&gt;&gt;&gt;description&nbsp;of&nbsp;reality&nbsp;(assessment&nbsp;scores&nbsp;such&nbsp;as&nbsp;DOPE&nbsp;are&nbsp;typically
&gt;&gt;&gt;more&nbsp;reliable).
&gt;&gt;&gt;
&gt;&gt;&gt;&nbsp;&nbsp;&nbsp;&nbsp;Ben&nbsp;Webb,&nbsp;Modeller&nbsp;Caretaker
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