<br clear="all"><div>Dear Modeller Users,</div><div><br></div><div>I trying simple modelling methodology to model required protein structure.<br>Till build_profile.py everything went well.<br><br>But when gave compare.py.....i am get an error as follows</div>
<div><br></div><div><div><b>Traceback (most recent call last):</b></div><div><b> File "compare.py", line 11, in ?</b></div><div><b> m = model(env, file=pdb, model_segment=('FIRST:'+chain, 'LAST:'+chain))</b></div>
<div><b> File "C:\Program Files\Modeller9v7\modlib\modeller\model.py", line 72, in __in</b></div><div><b>it__</b></div><div><b> self.read(**vars)</b></div><div><b> File "C:\Program Files\Modeller9v7\modlib\modeller\model.py", line 117, in rea</b></div>
<div><b>d</b></div><div><b> model_format, model_segment)</b></div><div><b>IOError: pdbnam_____E> Filename for PDB code not found: 3d3l</b></div><div><b> Directories: .;atom_files</b></div><div><b> Extensions : ;.atm;.pdb;.ent;.crd</b></div>
<div><b> (Also tried prepending 'pdb', looking for .Z, .gz, .bz2, .7z,</b></div><div><b> and trying PDB-style subdirectories - e.g. ab for pdb1abc.ent)</b></div></div><div><br></div><div>
Do I need make any modifications in my compare.py file....I am attaching compare.py file which i used.<br>Please help me with this problem.</div><div><br></div><div>Thanking You,</div><div>Anogna</div><br><br>