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DBAli UPDATES NOTE
The PDB has recently released a new version of the remediated PDB files.
In order to adapt all the DBAli scripts and programs (currently more than 13,000 Perl lines and more than 5,000 PHP lines),
we have decided to stop the updates until all the code is verified to properly work with the new PDB files.
DBAli. A Database of Structure Alignments.
with the help of Madhusudhan M.S., E. Narayanan, B. Webb
and
A. Ortiz's MAMMOTH program.
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This site contains an up-to-date all-against-all comparison of protein structures.
Currently, DBAli contains 1,748,371,897 pairwise structural alignments generated by
MAMMOTH and family based
multiple structure alignments for 34,637 non-redundant chains in PDB generated by
MODELLER. The database also includes
several links to internal and external resources.
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| Use the links from the left frame to:
- Find structural relationships deposited in DBAli (Search)
- Analyze the data deposited in DBAli (Tools)
- Browse special pages for Structural Genomics
- Obtain help on how-to use DBAli (Help)
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CIPF | SGU Lab | UCSF | Sali Lab | DBAli | MAMMOTH 