| Cluster a list of chains using the structural relationships stored in DBAli.
Predefined sets of parameters for removing high, medium or low redundancy
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DBAli help.
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Input/Output option in DBAli.
Input:
File with a list of chains.
Enter a list of chains to a text file and upload into DBAli web server. The
list should contain valid PDB chains of the format XXXXY where XXXX is
the PDB code (e.g. 1ad5) and Y is the chain letter (e.g. A). Any line in the file starting
with # will be ommited.
Input:
File with atom coordinates.
Coordinates should be in PDB format. Any TAG accepted by PDB will be properly parsed.
The DBAli program will work only at the chain level. If your file contains more than one chain they will be treated as continous and unique chain.
No other macromolecules besides proteins should be included in the PDB input file.
Please, clean your files before you load them into DBAli. Thanks.
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CIPF | SGU Lab | UCSF | Sali Lab | DBAli | MAMMOTH 