IMP  2.3.1
The Integrative Modeling Platform
domino/utility.h File Reference

Functions to get report statistics about the used attributes. More...

#include <IMP/domino/domino_config.h>
#include "Assignment.h"
#include "Subset.h"
#include "particle_states.h"
#include <IMP/kernel/Particle.h>
#include <IMP/SingletonContainer.h>
#include <IMP/RestraintSet.h>
#include <IMP/kernel/Model.h>
#include <IMP/core/internal/CoreClosePairContainer.h>
#include <IMP/display/Writer.h>
#include <IMP/dependency_graph.h>
#include <IMP/statistics/metric_clustering.h>
#include <RMF/HDF5/Group.h>
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Namespaces

 IMP
 Synonym for IMP::kernel.
 
 IMP::domino
 Divide-and-conquer inferential optimization in discrete space.
 
 IMP::kernel
 Base functionality and abstract base classes for representation, scoring and sampling.
 

Functions

double IMP::domino::get_distance_if_smaller_than (const Subset &s, const Assignment &a, const Assignment &b, ParticleStatesTable *pst, const statistics::Metrics &metrics, double max)
 
algebra::VectorKD IMP::domino::get_embedding (const Subset &s, const Assignment &a, ParticleStatesTable *pst)
 Return an embedding for an assignment. More...
 
Ints IMP::domino::get_index (const kernel::ParticlesTemp &particles, const Subset &subset, const Subsets &excluded)
 
Assignment IMP::domino::get_nearest_assignment (const Subset &s, const algebra::VectorKD &embedding, ParticleStatesTable *pst)
 Return the nearest assignment from an embedding. More...
 
Ints IMP::domino::get_partial_index (const kernel::ParticlesTemp &particles, const Subset &subset, const Subsets &excluded)
 
kernel::ParticlePairsTemp IMP::domino::get_possible_interactions (const kernel::ParticlesTemp &ps, double max_distance, ParticleStatesTable *pst)
 

Debug tools

We provide a number of different functions for helping optimize and understand domino-based sampling. These functions are expose part of the implementation and are liable to change without notice.

void IMP::domino::load_particle_states (const Subset &s, const Assignment &ss, const ParticleStatesTable *pst)
 
kernel::RestraintsTemp IMP::domino::get_restraints (const Subset &s, const ParticleStatesTable *pst, const DependencyGraph &dg, kernel::RestraintSet *rs)
 

Detailed Description

Functions to get report statistics about the used attributes.

Copyright 2007-2014 IMP Inventors. All rights reserved.

Definition in file domino/utility.h.