As I was running in to issues converting units for handling various bits
of data I wrote some classes to help. I have one class for MKS units and
one for the KCal/Mol/Angstrom sorts of units that MD expects. And
methods to handle conversions between the two. Using them you can write
things like PicoJoules(1)/Meter(2) and get something with the right
units out and then call convert_to_kcal to convert it to the MD units.
Perhaps the latter unit should be called MDUnit or something.
I have no particular problem with any of this, except that the comments
(not sure about the code though) seem rather confused about many of the
units. I don't know what KCal and Mol are, for example - these should be
kcal and mol, of course. And there are far better sources for
fundamental constants than Wikipedia!
It is written as C++ template classes but specific units can probably be
exposed to python. However I think Scientific Python already includes
this sort of thing, so it is probably not very useful.
Indeed. Certainly MMTK does.
Assuming a cleaned-up version of this patch is available, and nobody has
further comments/suggestions, I can commit it later tomorrow.
Ben
--
http://salilab.org/~ben/
"It is a capital mistake to theorize before one has data."
- Sir Arthur Conan Doyle