Subject: Re: [IMP-dev] [EMBED-dev] Merge of EMBED into IMP
From: Friedrich Foerster <>
Date: Tue, 28 Apr 2009 16:44:54 +0200
Reply-to: List for IMP development <>
i recompiled the code taking out build="fast". then the unit tests
actually work. however, imp is way too slow to do any serious
calculations with the default-whatever-it-does.
apparently, what is happening is that the parameter setting in
SampledDensityMap::resample fails. when the code tries to use the
unset pointers, the unit test fails with a segmentation fault.
it would be great if an imp expert could look into that.
thanks
frido
On Apr 28, 2009, at 4:11 PM, Ben Webb wrote:
Friedrich Foerster wrote:
however, currently IMP.em/EMBED is not working anymore, at least for
me. the essential unit test test_em_fit.py does not work on my
machine. apparently, the parameter initialization does not work. the
test crashes with a segmentation fault.
That's odd - it works just fine here on all of our test machines. You
should try a fresh checkout - perhaps something got messed up in your
copy of IMP. If that still doesn't work, build with 'scons
build=debug'
then run the test through gdb to figure out where it's crashing. What
kind of machine are you running on?
Ben
--
http://salilab.org/~ben/
"It is a capital mistake to theorize before one has data."
- Sir Arthur Conan Doyle
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