IMP.pmi1 test results for build on 2024-04-22, develop 27926d84dc

These were generated by the Fast build (64-bit Linux, Rocky 8.9, Boost 1.73, Python 3).

See also:

[+] Name Runtime (s) State Delta
[+] test_plotting.py 
======================================================================
EXPFAIL: Tests.test_graphxl
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Traceback (most recent call last):
  File "/tmp/nightly-build-1/imp-20240422.develop.27926d84dc/modules/pmi1/test/test_plotting.py", line 35, in test_graphxl
    g = IMP.pmi1.plotting.topology.TopologyPlot(IMP.Model(),dd,15.0)
TypeError: __init__() missing 1 required positional argument: 'frequency_cutoff'
0.39 EXPFAIL
[+] expensive_test_cross_link_ms_restraint.py 
======================================================================
EXPFAIL: Tests.test_restraint_probability_beads
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/tmp/nightly-build-1/imp-20240422.develop.27926d84dc/modules/pmi1/test/expensive_test_cross_link_ms_restraint.py", line 347, in test_restraint_probability_beads
    self.assertAlmostEqual(prob/test_prob,1.0, delta=0.0001)
AssertionError: 0.9402297788995942 != 1.0 within 0.0001 delta
8.50 EXPFAIL
[+] expensive_test_restraints.py 
======================================================================
EXPFAIL: Tests.test_restraints
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Traceback (most recent call last):
  File "/tmp/nightly-build-1/imp-20240422.develop.27926d84dc/modules/pmi1/test/expensive_test_restraints.py", line 22, in test_restraints
    pdbfile = IMP.pmi1.get_data_path("1WCM.pdb")
  File "/tmp/nightly-build-1/build/lib/IMP/pmi1/__init__.py", line 1683, in get_data_path
    return _IMP_pmi1.get_data_path(fname)
_IMP_kernel.IOException: Unable to find data file 1WCM.pdb in [/tmp/nightly-build-1/build/data, /salilab/diva1/home/imp/develop/20240422-27926d84dc/data/IMP]. IMP is not installed or set up correctly.
0.43 EXPFAIL
[+] expensive_test_replica_exchange.py 
======================================================================
FAIL: Tests.test_macro_rmf_stat
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/tmp/nightly-build-1/imp-20240422.develop.27926d84dc/modules/pmi1/test/expensive_test_replica_exchange.py", line 260, in test_macro_rmf_stat
    self.assertAlmostEqual(avscore, t/2, delta=0.1)
AssertionError: 0.6205444249830908 != 0.5 within 0.1 delta
4.21 FAIL NEWFAIL
modeller_model.py 0.03 OK
medium_test_standards.py 0.67 OK
medium_test_crosslink.py 1.50 OK
medium_test_analysis.py 1.22 OK
medium_test_set_coordinates_from_rmf.py 1.09 OK
medium_test_selection.py 1.82 OK
medium_test_stat_hierarchy_handler.py 2.09 OK
medium_test_stereochemistry.py 0.43 OK
medium_test_topology.py 0.40 OK
test_ambiguous.py 0.48 OK
test_GaussianEMRestraint_rigidbody.py 0.82 OK
test_basic.py 0.57 OK
test_cylinder_restraint.py 0.66 OK
test_em2d.py 0.89 OK
test_em_fit.py 1.04 OK
test_hierarchy_construction.py 0.49 OK
test_linear_restraint.py 0.25 OK
test_io_crosslink.py 0.57 OK
test_macros.py 0.41 OK
test_membrane_restraint.py 0.62 OK
test_metadata.py 0.42 OK
test_mmcif.py 2.15 OK
test_multistate.py 0.53 OK
test_nuisance_mover.py 0.39 OK
test_nonbond.py 0.41 OK
test_output_geometries.py 0.45 OK
test_output.py 0.92 OK
test_parameter_restraints.py 0.41 OK
test_pdb_writing.py 2.07 OK
test_plane_dihedral.py 0.41 OK
test_protocol_output.py 0.39 OK
test_provenance.py 0.43 OK
test_psf_writing.py 0.42 OK
test_replica_exchange.py 0.41 OK
test_stopwatch.py 0.41 OK
test_restraint_base.py 0.41 OK
test_surface_mover.py 0.40 OK
test_tools.py 0.84 OK
test_topology_input.py 0.55 OK
test_transform_mover.py 2.13 OK
test_utilities.py 0.36 OK
expensive_test_disulfide_bond_restraint.py 0.42 OK
expensive_test_input.py 3.92 OK
expensive_test_io_xtable.py 10.59 OK
expensive_test_loop_reconstruction.py 2.81 OK
expensive_test_new_cross_link_ms_restraint.py 11.18 OK
test_npc.py 0.47 OK