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automodel.nonstd_restraints() -- add restraints on ligands

nonstd_restraints(aln)
This method is called automatically by automodel after it generates the standard protein restraints. It adds restraints to keep non-standard residues (anything treated as a HETATM or BLK residue, such as ligands or metal ions) in a reasonable conformation. You can override this method if you need to change these restraints.

By default, four sets of restraints are built:


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Automatic builds 2014-02-11