- alignment.check_sequence_structure() no longer erroneously warns
about the potentially large CA-CA distances between residues in different
chains.
- Add Python 3.5 support.
- Bundled version of HDF5 updated to 1.8.14.
- Bugfix: process file xxx.c.pdb as a PDB file, not mmCIF.
- Bugfix: alignment.write() no longer fails on Python filelike objects.
- Bugfix: under some circumstances, overriding
loopmodel.special_patches() would cause coordinates to be incorrectly
assigned and/or a "list index out of range" error.
- Bugfix: in certain badly-performing optimizations, the nlogn nonbond pair
generation function would use all system memory. It is now capped at
approximately 200MiB, controllable with the
energy_data.max_nlogn_grid_cells parameter.
Automatic builds
2016-01-07
