[IHM-repval] Linking integrative models out to experimental data
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Subject: [IHM-repval] Linking integrative models out to experimental data
From: Ben Webb <>
Date: Mon, 27 Feb 2017 16:41:44 -0800
Hi all,
As you know, whenever we build an integrative or hybrid model we need to
point to multiple sources of input experimental data. It doesn't make
sense to embed that data directly in an mmCIF file because that would be
very inefficient, so instead we need to link out to wherever the raw
and/or processed experimental datasets are stored, ideally in a
repository maintained by experts in the field (e.g. PDB, EMDB, SASBDB).
I've summarized the kinds of data that we've been dealing with so far in
our own modeling, with pointers to repositories where available, in the
wiki:
Please take a look and add to it (or reply to this email). It seems
likely that there are many modeling scenarios that neither RCSB nor the
Sali lab have considered thus far.
Ben
--
https://salilab.org/~ben/
"It is a capital mistake to theorize before one has data."
- Sir Arthur Conan Doyle