Linux huge version and multiple and not overlapping templates

[Xiao-Ping Zhang <>]

Hi, 

I would like to ask a few questions:

1. I wonder if somebody succeeded with modelling of a protein with
"multiple and not overlapping templates" (sorry for asking an old question)
with Modeller. I have two situations about this issue: (1) model a two
domain protein from two separate pdb files, there is a gap about 10
residues between them; and (2) model a two subunits protein from one pdb
file which contains many subunits. I would appreciate very much if I can
share your experience (How the top file is and how the alignment file
should be?). Which program is the best for these kinds of modeling?

2. Has anybody compiled a linux huge version? I would like to try on the
above examples.

3. Does anybody know a modeling program in which you can do ab initio
modeling for short peptide (30-60 residues)?

Thank you very much for your kind attention.

Sincerely yours,

Xiao-Ping Zhang



 
------------------------------------------------
Xiao-Ping Zhang
Department of Biochemistry
Stockholm University
106 91 Stockholm
Sweden

Phone: 46-08-162582 / 162472
Fax: 46-08-153679
e-mail: