The top file is:
READ_MODEL FILE = '1HZX.pdb', MODEL_SEGMENT '@:A' 'X:A',
OUTPUT_CONTROL = 1 1 1 1
SEQUENCE_TO_ALI ALIGN_CODES = '1HZX'
READ_ALIGNMENT FILE = 'hp2y1.seq', ALIGN_CODES = ALIGN_CODES
'hp2y1', ;
ADD_SEQUENCE = on
READ_TOPOLOGY FILE = '/u/ch/majord/modeller/modeller6a/modlib/top_heav.lib'
ALIGN2D
WRITE_ALIGNMENT FILE = 'hp2y1-1HZX.ali', ALIGNMENT_FORMAT
= 'PIR'
WRITE_ALIGNMENT FILE = 'hp2y1-1HZX.pap', ALIGNMENT_FORMAT
= 'PAP', ;
ALIGNMENT_FEATURES = 'indices helix beta'
The error reported is:
...
# Code
#_Res #_Segm PDB_code Name
-------------------------------------------------------------------------------
1 1HZX
641 3
1HZX undefined
2 hp2y1
373 1
hp2y1
TOP_________> 4
4 READ_TOPOLOGY FILE = '/u/ch/majord/modeller/modeller6a/mo;
dlib/top_heav.lib'
openf5__224_> Open
11 OLD SEQUENTIAL ${MODINSTALL6a}/modlib//as1.sim.mat
rdrrwgh_268_> Number of residue types:
20
dispers_247E> Internal error:
640 641
recover____E> ERROR_STATUS >= STOP_ON_ERROR:
1 1
Dynamically allocated memory at
finish [B,kB,MB]: 23066567 22525.945
21.998
Starting time
: 2001/11/12 13:53:59.313
Closing time
: 2001/11/12 14:41:13.406
Total CPU time [seconds]
: 0.00
Thanks, Dan
-- Dan Thomas Major (at Dr. B. Fischer's lab) Bar-Ilan University Ramat-Gan, Israel