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Regarding modeller usage



 Dear modeller users,

   After i am getting the initial model using modeller if any bad regions
are there(loop regions) i am using the following module for refinement.

INCLUDE 
SET SEQUENCE = 'topmodel' 
SET MODEL = 'topmodel.pdb' 
SET STARTING_MODEL = 1 
SET ENDING_MODEL = 2 
CALL ROUTINE = 'loop'

SUBROUTINE ROUTINE = 'select_atoms'
    PICK_ATOMS SELECTION_SEGMENT = '0:' '3:', SELECTION_STATUS ='initialize'
    RETURN 
END_SUBROUTINE

Actually i want to know whether the following module does the refinement
of the loop or the loop building with some other loop.Please tell what is
the exact use of this module.Expecting for your reply.

                                               Yours friendly,
                                           Senthil kumar.R