Dan,
you need to use the SEQUENCE_TO_ALI command first, to copy the models'
sequences and coordinates into the memory. Check the manual for explanation and
example under sequence_to_ali ( and compare_alignments).
The fact, that you have identical sequences in your models, should not have any
effect on the structural alignment.
Andras
Dan Thomas Major wrote:
>
> I'm trying to align the structures that modeller produces by using the
> following top script:
>
> SET ATOM_FILES = 'hp2y1.B99990001' 'hp2y1.B99990002' 'hp2y1.B99990003' ;
> 'hp2y1.B99990004' 'hp2y1.B99990005'
> SET WRITE_FIT = on
> SET MAXRES = 2000
> MALIGN3D
>
> Modeller gives an error:
> malign3_327W> Only one structure; nothing done.
>
> How can I tell modeller to align the structures even if they are the same?
> Thanks, Dan
>
> --
> Dan Thomas Major (at Dr. B. Fischer's lab)
> Bar-Ilan University
> Ramat-Gan, Israel
>
>
--
,
Andras Fiser, PhD # phone: (212) 327 7216
The Rockefeller University # fax: (212) 327 7540
Box 270, 1230 York Avenue # e-mail:
New York, NY 10021-6399, USA # http://salilab.org/~andras