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Re: MALIGN3D



Dan,

you need to use the SEQUENCE_TO_ALI  command first, to copy the models'
sequences and coordinates into the memory. Check the manual for explanation and
example under sequence_to_ali ( and compare_alignments).

The fact, that you have identical sequences in your models, should not have any
effect on the structural alignment.

Andras

Dan Thomas Major wrote:
> 
> I'm trying to align the structures that modeller produces by using the
> following top script:
> 
> SET ATOM_FILES = 'hp2y1.B99990001' 'hp2y1.B99990002' 'hp2y1.B99990003' ;
>    'hp2y1.B99990004' 'hp2y1.B99990005'
> SET WRITE_FIT = on
> SET MAXRES = 2000
> MALIGN3D
> 
> Modeller gives an error:
> malign3_327W> Only one structure; nothing done.
> 
> How can I tell modeller to align the structures even if they are the same?
> Thanks, Dan
> 
> --
> Dan Thomas Major (at Dr. B. Fischer's lab)
> Bar-Ilan University
> Ramat-Gan, Israel
> 
> 

-- 
    ,
Andras Fiser, PhD            # phone: (212) 327 7216
The Rockefeller University   # fax:   (212) 327 7540 
Box 270, 1230 York Avenue    # e-mail:
New York, NY 10021-6399, USA # http://salilab.org/~andras