MODELLER 6v2, 17 Feb 2002

     PROTEIN STRUCTURE MODELLING BY SATISFACTION OF SPATIAL RESTRAINTS

                                                                 
                     Copyright(c) 1989-2002 Andrej Sali          
                            All Rights Reserved                  
                                                                 
                            Written by A. Sali                   
          with help from A. Fiser, R. Sanchez, M.A. Marti-Renom, 
                   B. Jerkovic, A. Badretdinov, F. Melo,         
                       J.P. Overington & E. Feyfant              
                   Rockefeller University, New York, USA         
                     Harvard University, Cambridge, USA          
                 Imperial Cancer Research Fund, London, UK       
             Birkbeck College, University of London, London, UK  


Kind, OS, HostName, Kernel, Processor: 4, Linux genoma5 2.4.20-8 i686
Date and time of compilation         : 07/16/2002 11:42:16
Job starting time (YY/MM/DD HH:MM:SS): 2004/07/27  18:15:06.865

TOP_________>   105  705 SET ALNFILE  = 'pri.ali' 
 
TOP_________>   106  706 SET KNOWNS   = '1uw3' 
 
TOP_________>   107  707 SET SEQUENCE = '1pri' 
 
TOP_________>   108  708 SET ATOM_FILES_DIRECTORY = './:../atom_files' 
 
TOP_________>   109  709 SET STARTING_MODEL = 1 
 
TOP_________>   110  710 SET ENDING_MODEL  = 1 
 
TOP_________>   111  711 CALL ROUTINE = 'model' 
 
TOP_________>   112  399 CALL ROUTINE = 'getnames' 
 
TOP_________>   113  509 STRING_IF STRING_ARGUMENTS = MODEL 'undefined', OPERATION;
                       = 'EQ', THEN =     'STRING_OPERATE OPERATION = CONCATENA;
                      TE, STRING_ARGUMENTS = SEQUENCE .ini, RESULT = MODEL' 
 
TOP_________>   114  510 STRING_IF STRING_ARGUMENTS = CSRFILE 'undefined', OPERATI;
                      ON = 'EQ', THEN =     'STRING_OPERATE OPERATION = CONCATE;
                      NATE, STRING_ARGUMENTS = SEQUENCE .rsr,  RESULT = CSRFILE;
                      ' 
 
TOP_________>   115  511 STRING_OPERATE OPERATION = 'CONCATENATE',                ;
                         STRING_ARGUMENTS = SEQUENCE '.sch',  RESULT = SCHFILE 
 
TOP_________>   116  512 STRING_OPERATE OPERATION = 'CONCATENATE',                ;
                        STRING_ARGUMENTS = SEQUENCE '.mat',  RESULT = MATRIX_FI;
                      LE 
 
TOP_________>   117  513 SET ROOT_NAME = SEQUENCE 
 
TOP_________>   118  514 RETURN 
 
TOP_________>   119  400 CALL ROUTINE = 'homcsr' 
 
TOP_________>   120  106 READ_ALIGNMENT FILE = ALNFILE, ALIGN_CODES = KNOWNS SEQUE;
                      NCE 
 

Dynamically allocated memory at         amaxseq [B,kB,MB]:      2205269    2153.583     2.103
openf5__224_> Open       11  OLD  SEQUENTIAL  pri.ali
openf5__224_> Open       13  OLD  SEQUENTIAL  ../atom_files/pdb1uw3.ent

Dynamically allocated memory at         amaxbnd [B,kB,MB]:      3882961    3791.954     3.703
openf5__224_> Open       11  OLD  SEQUENTIAL  pri.ali
openf5__224_> Open       13  OLD  SEQUENTIAL  ../atom_files/pdb1uw3.ent
rdpir___648E> Alignment sequence not found in PDB file:        1  ../atom_files/pdb1uw3.ent
recover____E> ERROR_STATUS >= STOP_ON_ERROR:        1       1

Dynamically allocated memory at          finish [B,kB,MB]:      3882961    3791.954     3.703
Starting time                                            : 2004/07/27  18:15:06.865
Closing time                                             : 2004/07/27  18:15:09.479
Total CPU time [seconds]                                 :       2.53