MODELLER 8v2, Feb 28, 2006 05:48pm

     PROTEIN STRUCTURE MODELLING BY SATISFACTION OF SPATIAL RESTRAINTS

                                                                   
                     Copyright(c) 1989-2006 Andrej Sali            
                            All Rights Reserved                    
                                                                   
                             Written by A. Sali                    
                               with help from                      
           B. Webb, M.S. Madhusudhan, M-Y. Shen, M.A. Marti-Renom, 
                N. Eswar, F. Alber, M. Topf, B. Oliva, A. Fiser,   
                    R. Sanchez, B. Yerkovich, A. Badretdinov,      
                      F. Melo, J.P. Overington, E. Feyfant         
                 University of California, San Francisco, USA      
                    Rockefeller University, New York, USA          
                      Harvard University, Cambridge, USA           
                   Imperial Cancer Research Fund, London, UK       
              Birkbeck College, University of London, London, UK   


Kind, OS, HostName, Kernel, Processor: 4, Win2000 build  2195 Service Pack 4, MPH, SMP, x86 Family  15 Model  2 Stepping  9
Date and time of compilation         : 02/28/2006 17:49:53
MODELLER executable type             : i386-w32
Job starting time (YY/MM/DD HH:MM:SS): 2008/04/07  09:43:28.531

openf5__224_> Open       11  OLD  SEQUENTIAL  $(LIB)/restyp.lib
openf5__224_> Open       11  OLD  SEQUENTIAL  ${MODINSTALL8v2}/modlib/resdih.lib
rdrdih__263_> Number of dihedral angle types         :        9
              Maximal number of dihedral angle optima:        3
              Dihedral angle names                   :  Alph Phi Psi Omeg chi1 chi2 chi3 chi4 chi5
openf5__224_> Open       11  OLD  SEQUENTIAL  ${MODINSTALL8v2}/modlib/radii.lib
openf5__224_> Open       11  OLD  SEQUENTIAL  ${MODINSTALL8v2}/modlib/radii14.lib
openf5__224_> Open       11  OLD  SEQUENTIAL  ${MODINSTALL8v2}/modlib/af_mnchdef.lib
rdwilmo_274_> Mainchain residue conformation classes:  APBLE
openf5__224_> Open       11  OLD  SEQUENTIAL  ${MODINSTALL8v2}/modlib/mnch.lib
rdclass_257_> Number of classes:        5
openf5__224_> Open       11  OLD  SEQUENTIAL  ${MODINSTALL8v2}/modlib/mnch1.lib
openf5__224_> Open       11  OLD  SEQUENTIAL  ${MODINSTALL8v2}/modlib/mnch2.lib
openf5__224_> Open       11  OLD  SEQUENTIAL  ${MODINSTALL8v2}/modlib/mnch3.lib
openf5__224_> Open       11  OLD  SEQUENTIAL  ${MODINSTALL8v2}/modlib/xs4.mat
rdrrwgh_268_> Number of residue types:       21
runcmd______> alignment.append(align_codes=['a.pdb', 'Q16602'], atom_files=[], file='a.pir', (def)remove_gaps=True, (def)alignment_format='PIR', add_sequence=True, (def)rewind_file=False, (def)close_file=True)

openf___224_> Open           a.pir

Dynamically allocated memory at   amaxalignment [B,kB,MB]:      2128009    2078.134     2.029
read_al_373E> Protein specified in ALIGN_CODES(i) was not found
              in the alignment file; ALIGN_CODES(       1) =  a.pdb