Re: [modeller_usage] how to treat an unaligned 46-amino acid long insertion

[Modeller Caretaker <>]

On 02/14/2010 06:03 PM, Thomas Evangelidis wrote:
> what's the best way to refine the structure of a 46 amino acid long
> insertion which is not aligned with any of the templates?

Modeller does comparative modeling, so it needs a template for that 
region. If you can't find another template that has detectable 
similarity to your sequence in that region, you can choose not to model 
that part of the structure.

	Ben Webb, Modeller Caretaker
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