[modeller_usage] generated models superimposition

[Белалов Илья <>]

Dear Modeller Caretaker and Modeller users,

I want Modeller to fit generated models by dope_loopmodel class.
But only structures derived from the same IL000* file are superimposed
to it. Also templates are aligned, but not to generated models.

Thanks in advance,
Ilya.
I used following:

class MyModel(dope_loopmodel):
    def special_patches(self, aln):
        self.patch(residue_type='DISU', residues=(self.residues['21'],
                                                  self.residues['92']))
log.very_verbose()
env = environ()
env.io.atom_files_directory = ['.', '../']

a = MyModel(env,
            alnfile='../mulalignment.ali',
            knowns=('1', '2','3'),
            sequence='d6',
            assess_methods=assess.DOPE,
            loop_assess_methods=assess.DOPE)


a.starting_model      = 1
a.ending_model        = 3
a.md_level            = refine.very_fast

a.loop.starting_model = 1
a.loop.ending_model   = 3
a.loop.md_level       = refine.very_fast

a.final_malign3d      = True
a.make()