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Re: [modeller_usage] sorting loop refined models.

On 10/2/10 12:30 PM, Knut J Bjuland wrote:

    I have written a script that choose the best model for furthor loop
refined. How can I output the dopce score for each loop model and print
out the best loop model. I have tried using this script

...

but I only get molftp.

I assume you mean molpdf here. But you've missed out the first part of 
the script, which is the important bit. ;) In order to get the DOPE 
score for each loop model, use the loop_assess_methods argument to the 
loopmodel constructor, e.g.

b = loopmodel(env, alnfile='alignment.ali',
              knowns='5fd1', sequence='1fdx',
              loop_assess_methods=assess.DOPE)

	Ben Webb, Modeller Caretaker
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