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[modeller_usage] flex-em in parallel mode?
- To:
- Subject: [modeller_usage] flex-em in parallel mode?
- From: "Nathalie Braun, TUM" <>
- Date: Tue, 19 Oct 2010 18:01:59 +0200
- Reply-to:
Hi,
I am trying to run flex-em.py out of the cryoem_files examples in
parallel mode.
I tried for example the following script. It runs. Nevertheless only one
CPU is used.
(The example model-parallel.py works perfectly)
----------------------------------------------------------------------------------------------------
from modeller import *
from MD import opt_md
from modeller.parallel import *
log.minimal()
j = job()
j.append(local_slave()) #CPU 1
j.append(local_slave()) #CPU 2
log.verbose() # request verbose output
env = environ()
j.queue_task(opt_md('./', 'xxxx', str(2), 10*2, 'mod2b.mrc', 'mod2bn.pdb',
'MRC', 1.8, 64, 15, 1.8, 1.8, 1.8, 'rigid.txt'))
results= j.run_all_tasks()
---------------------------------------------------------------------------------------------------------
Thanks for your help
Nathalie