Re: [modeller_usage] question about restraint violations

[Modeller Caretaker <>]

On 10/19/10 4:53 PM, Song, Hyundeok (songhk) wrote:
> I generated some protein by Modeller.
> When I checked the log file, I found a lot of restraint violations.
> I have a question.
> How can I remove restrain violations ?

Restraint violations, particularly of the distance restraints, tend to 
indicate either a poor choice of template (e.g. low coverage or low 
sequence identity) or an optimizer failure. In the latter case, simply 
build more models and pick the best one. In the former case, look for 
better templates.

	Ben Webb, Modeller Caretaker
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