In summary: I have PDB files with short gaps and want to produce
gap-less models just from one template each. The models should be
identical to the templates except, obviously in the missing regions. I
do not care much about the accuracy of the predictions for those regions.
The aforementioned script does exactly that. The problem is that I need
to define all the gaps manually.
The question is: can Modeller identify and/or report those gaps
(position and length) in order to help us to automatise the task?
If not, are you aware or another tool that does that or should I write
an ad hoc script?
Best regards,
--
Edelmiro Moman, PhD
ProSciens, computer-aided drug design
2-4 rue du Palais de Justice
L-1841 Luxembourg
Phone : +352 2728-2588
E-mail :
http://prosciens.com