On 02/13/2015 08:26 AM, Anjela Manandhar wrote:
I need to model N and C terminal residues. For N terminal it is only 1 residue, whereas for C terminal it is 12 residues. Can I use Loop Refinement for this?
You can certainly try it - a 12 residue loop is pretty long though, and since one end isn't anchored, Modeller probably won't be able to pack it properly.
Ben Webb, Modeller Caretaker -- http://www.salilab.org/modeller/ Modeller mail list: https://salilab.org/mailman/listinfo/modeller_usage