[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

Re: [modeller_usage] Is my model a good one based on these values?



Sorry I did not get you. How do I get a normalized DOPE score? Forgive me if I asked a very rookie question, I am new to modeller.

Best,
Arijit

On Wed, Mar 4, 2015 at 12:44 PM, Modeller Caretaker <" target="_blank">> wrote:
On 3/3/15 10:37 PM, Arijit Ghosh wrote:
 >> Summary of successfully produced models:
Filename                          molpdf     DOPE score    GA341 score
----------------------------------------------------------------------

molpdf and DOPE are both "energy" scores, so don't tell you if your model is "good" - you can only really use them to rank models. A GA341 score of 1.0 does suggest a good model, but a better score to use these days is normalized DOPE.

        Ben Webb, Modeller Caretaker
--
" target="_blank">             http://www.salilab.org/modeller/
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage



--
Arijit Ghosh
4th Year Integrated MSc.
School of Biological Sciences
National Institute of Science Education and Research
Bhubaneswar, Orissa-751005, India
Alternate electronic contact: " target="_blank">
Handheld: +91-986-171-9393