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Re: [modeller_usage] Is energy minimization possible in MODELLER?

To: Arijit Ghosh <>,
Subject: Re: [modeller_usage] Is energy minimization possible in MODELLER?
From: Modeller Caretaker <>
Date: Mon, 16 Mar 2015 21:10:31 -0700

On 3/13/15 9:06 PM, Arijit Ghosh wrote:

I made a good homology model with MODELLER, it's showing good
credibility in all the programs in SAVES server, but I want to do an
energy minimization before I go for docking some small ligands onto it.

Please let me know if it is possible in MODELLER?

Modeller models are already minimized against its own scoring function.You could certainly try to do further minimization using a differentscoring function, but it's debatable whether that would "improve" models.


	Ben Webb, Modeller Caretaker
--
             http://www.salilab.org/modeller/
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage

References:
- [modeller_usage] Is energy minimization possible in MODELLER?
  - From: Arijit Ghosh <>

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