On 4/10/15 1:11 AM, Ming Tang wrote:
I want to build the collagen I microfibril structure. I have the tough structure 3HR2 from PDB, which contains only the Carbon and rattus norvegicus, and the amino acid sequences of bovine. I learnt from the literature that homology modelling can be used to achieve this goal. I am totally new in Modeller. Where should I start? Is there any examples for me to follow?
What you describe does not sound unusual. You should read through the tutorial on our website and at least the first part of the manual - there are many examples.
Ben Webb, Modeller Caretaker -- http://www.salilab.org/modeller/ Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage