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Re: [modeller_usage] prepartion input file for modeller

On 5/12/15 7:11 AM, m_deghan1361 wrote:

  after finding a suitable template by protein blast, should I upload a
complete fasta of templete to create PIR file or  fasta sequence of
templete resulting from blast?
You can use as much or as little of the template sequence as you want - but Modeller will only use structural information from the template where it is aligned to your model sequence. 

	Ben Webb, Modeller Caretaker
--
             http://www.salilab.org/modeller/
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