On 11/16/15 6:40 AM, Kalantzi Alexandra Styliani wrote: > I would like to build a protein structure based on multiple > homologous proteins. But is it possible to keep few amino acids (main > and side chain) of a homologous structure fixed and build the rest of > the structure around these?
Sure, you can ask Modeller to only refine part of the model; see http://salilab.org/modeller/9.15/manual/node23.html
Ben Webb, Modeller Caretaker -- https://salilab.org/modeller/ Modeller mail list: https://salilab.org/mailman/listinfo/modeller_usage _______________________________________________ modeller_usage mailing list