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last update
Oct 6th, 2007
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DBAli ALERT!
06/17/08 - The DBAli database is no longer being updated.


DBAli. Tools associated to the database.
  • DBAlit! Compare your own structure to the whole PDB (temporarily not available)
  • AnnoLite: Fast annotation of a chain
  • AnnoLyze: Annotate a chain
  • ModClus: Cluster a list of chains
  • ModClus: Cluster from a chain
  • ModDom: Define domains from a chain
  • SALIGN: Get a multiple structure alignment of a list of chains
    		•
    Annotate a given chain using the DBAli, LigBase, PiBase and ModBase databases.
    Chain: 
    Min Seq. Id.:  Max Seq. Id.: 
    Min RMSD:  Max RMSD: 
    Min % Eqpos:  Max % Eqpos: 
    Min P-value:  Max P-value: 
    Type of annotation: General data 
    Homology based data 
    Inherited data 
    Domain data 
    Please note:
    - A permisive selection may result in significant server delay and incorrect annotation.
    - Running ModDom to obtain domain based data may result in significant server delay.
    - The annotation of a chain takes significant CPU time. Expect delays of about 2 minutes when selecting all availabe options.
    DBAli help. (Information from the MAMMOTH publication.)
    Distribution of MAMMOTH P-value with respect to length of the protein:


    Model quality using MAMMOTH scores. Each point is the mean P-value within each fold family as a function of the query protein length. Lines are a bilinear fitting using a cutoff at 200 residues (x < 200 and x > 200). Points correspond to individual families, and are colored as a function of PSI: red (0 < PSI 25), green (25 < PSI 50), cyan (50 < PSI 75), blue (75 < PSI 100)

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