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Exocyst Complex

Integrative Modeling of Yeast Exocyst Complex PubMed logo PDB-Dev

warningThese files work only with a nightly build of IMP on or after 2020-08-14, not the stable release. The files are also available at GitHub.
Additional software needed to use these files: IMP numpy scikit-learn install instructions

Anaconda logo To install the software needed to reproduce this system with the Anaconda Python command line tool (conda), run the following commands:

conda config --add channels salilab
conda install imp numpy scikit-learn

UCSF logo To set up the environment on the UCSF Wynton cluster to run this system, run:

module load Sali
module load imp python3/numpy python3/scikit
Tags chemical crosslinks EM density map PMI

Integrative Modeling of Yeast Exocyst Complex

DOI

These scripts demonstrate the use of IMP in the modeling of the yeast exocyst complex using DSS and EDC datasets, and a negative-stain EM density map. The scripts work with the IMP (Release 2.8.0).

List of files and directories:

Information

Author(s): Sai Ganesan

License: CC BY-SA 4.0 This work is licensed under the Creative Commons Attribution-ShareAlike 4.0 International License.

Last known good IMP version: build info build info

Publications: Ganesan SJ, Feyder MJ, Chemmama IE, et al. Integrative structure and function of the yeast exocyst complex. Protein Sci. 2020;29(6):1486-1501. doi:10.1002/pro.3863