All alignments were generated using the CE algorithm and selected using the DBAli server.
The alignemnts covered at least 90% of one of the sequences of the alignment if not the whole
chain. See next list showing the alignment dircetory, length of the alignment (Lali),
sequence id (SeqId), RMSD, CE Z-score and % of correctly aligned residues (with Ca within 3.5 A).

1zen-1ttpA  Lali: 225  SeqId: 05.7  RMSD: 2.9  Zscore: 4.6  Car: 78.1
1cen-1gowA  Lali: 278  SeqId: 09.6  RMSD: 2.9  Zscore: 5.0  Car: 79.4
1idjA-1bhe  Lali: 232  SeqId: 09.9  RMSD: 2.8  Zscore: 5.3  Car: 78.9
1ounA-1std  Lali: 119  SeqId: 10.1  RMSD: 2.2  Zscore: 5.7  Car: 92.4
1ganA-2pelC Lali: 126  SeqId: 10.3  RMSD: 2.9  Zscore: 4.7  Car: 82.5
4nll-1nksB  Lali: 116  SeqId: 10.3  RMSD: 3.5  Zscore: 4.2  Car: 64.7
1barA-1tie  Lali: 120  SeqId: 10.9  RMSD: 2.9  Zscore: 4.7  Car: 70.7 [DIFFICULT]
1dfiB-1sep  Lali: 224  SeqId: 12.6  RMSD: 2.4  Zscore: 6.3  Car: 89.7
1neu-1gigL  Lali: 106  SeqId: 13.7  RMSD: 2.0  Zscore: 5.0  Car: 95.1
1theB-1atk  Lali: 205  SeqId: 30.2  RMSD: 1.7  Zscore: 6.6  Car: 96.6 [EASY]

Each directory contains the alignments in PIR and PAP format as well as the individual PDB
files. In addition, the file fitted.pdb contains both structures superposed.

Alignments selected by Madhu [July, 5th 2000]