Loading genbank to modbase map from /trombone1/home/dbarkan/Schisto/Mapping/giToSmp/data/giToModbase.tab

Done loading genbank to modbase map.  Loaded 1395 entries.

Loading uniprot to genbank map from /trombone1/home/dbarkan/Schisto/Mapping/gbAndUpToGi/data/uniprotToGi.tab

Done loading uniprot to genbank map.  Loaded 884 entries

Loading gb to genbank map from /trombone1/home/dbarkan/Schisto/Mapping/gbAndUpToGi/data/gbToGiMap.tab

Done loading gb to genbank map.  Loaded 1207 entries

connecting
Retrieving mapping from modbase of modbase sequence ids to schistosoma Smp ids

Done retrieving modbase to smp map.  Retrieved 25440 entries
Loading Curwen filter accessions from /trombone1/home/dbarkan/Schisto/Filters/Cercaria/data/Curwen06/Curwen06Data.txt

Done loading Curwen accessions.  Loaded 14 entries

Done loading Knudsen accessions.  Loaded 40 entries

Done loading Knudsen accessions.  Loaded 3 entries

Done loading Knudsen accessions.  Loaded 50 entries

Hansell map: Got id P53442 source db sp name Fructose-bisphosphate aldolase
Hansell map: Got id P12546 source db sp name Cercarial protease precursor (elastase 1a)
Hansell map: Got id Q8MUV8 source db sp name Elastase 2a * not overlapping with P12546
Hansell map: Got id Q26552 source db sp name Elastase (elastase 1b) ** not overlapping with P12546 and Q8MUV8
Hansell map: Got id Q6LA98 source db sp name Cercarial elastase HP1 no unique peptides for this isoform
Hansell map: Got id Smp_006510 source db smp name elastase-like protein
Hansell map: Got id P06198 source db sp name Paramyosin
Hansell map: Got id Q05870 source db sp name Paramyosin, SCHJA only unique sequences
Hansell map: Got id P35661 source db sp name Glutathione S-transferase class-mu 26 kDa isozyme
Hansell map: Got id P09792 source db sp name Glutathione S-transferase class-mu 28 kDa isozyme
Hansell map: Got id Q86LC0 source db sp name Glutathione S-transferase omega
Hansell map: Got id P32070 source db sp name Antigen Sm21.7
Hansell map: Got id P08418 source db sp name Heat shock 70 kDa protein homolog *3 sequences shared with human
Hansell map: Got id Q8T9N5 source db sp name Thioredoxin
Hansell map: Got id Smp_003300 source db smp name Serpin C
Hansell map: Got id O77234 source db sp name Stathmin-like protein
Hansell map: Got id P91804 source db sp name Tegumental antigen Sm20.8
Hansell map: Got id Q9Y0D3 source db sp name Thioredoxin peroxidase
Hansell map: Got id Q26557 source db sp name Gynecophoral canal protein
Hansell map: Got id P27730 source db sp name Calpain
Hansell map: Got id Smp_089460.2 source db smp name Calpain III
Hansell map: Got id P15845 source db sp name 20 kDa calcium-binding protein
Hansell map: Got id Smp_123090 source db smp name venom allergen-like protein 4
Adding accessions loaded from curwen06 to final filter

Adding accessions loaded from knudsenLipid to final filter

Adding accessions loaded from knudsenNoInduction to final filter

Adding accessions loaded from knudsenAcetabular to final filter

Adding accessions loaded from hansell to final filter

Mapping Genbank accessions from all data sources and writing to filter at /trombone1/home/dbarkan/Schisto/Filters/Cercaria/data/cercariaFilter.txt
Mapping uniprot accessions from all data sources and writing to filter at /trombone1/home/dbarkan/Schisto/Filters/Cercaria/data/cercariaFilter.txt
