#I took TMHMM runs (in TMHMM_ABC_transporter_long) and #defined TMDs as 20 residues prior to the first TMH to 20residues #after the last TMH in the domain. #NOTES ON INDIVIDUAL ABCs #Most of the ABCAs have either an early TMH before the main group of TMDs or #a TMH in the middle of NBD1. Weird. #ABCA5 is a half transporter #ABCA8? sp_O95477_ABCA1_HUMAN_TMD_1 619 788 > sp_O95477_ABCA1_HUMAN_TMD_2 1635 1890 > tr_Q7Z2I9_ABCA10_HUMAN_TMD_1 114 349 > tr_Q7Z2I9_ABCA10_HUMAN_TMD_2 873 1153 > sp_Q86UK0_ABCA12_HUMAN_TMD_1 1043 1291 > sp_Q86UK0_ABCA12_HUMAN_TMD_2 1990 2313 > sp_Q9BZC7_ABCA2_HUMAN_TMD_1 686 934 > sp_Q9BZC7_ABCA2_HUMAN_TMD_2 1773 2030 > sp_Q99758_ABCA3_HUMAN_TMD_1 241 412 > sp_Q99758_ABCA3_HUMAN_TMD_2 1078 1344 > sp_P78363_ABCA4_HUMAN_TMD_1 637 802 > sp_P78363_ABCA4_HUMAN_TMD_2 1660 1916 > tr_Q8IVJ2_ABCA5_HUMAN_TMD_1 200 434 > tr_Q8N139_ABCA6_HUMAN_TMD_1 201 437 > tr_Q8N139_ABCA6_HUMAN_TMD_2 998 1234 > tr_Q8IZY2_ABCA7_HUMAN_TMD_1 531 697 > tr_Q8IZY2_ABCA7_HUMAN_TMD_2 1516 1771 > O94911_ABCA8_HUMAN_TMD_1 204 439 > O94911_ABCA8_HUMAN_TMD_2 960 1202 > tr_Q8IUA7_ABCA9_HUMAN_TMD_1 201 440 > tr_Q8IUA7_ABCA9_HUMAN_TMD_2 1006 1243 > sp_P08183_MDR1_HUMAN_TMD_1 29 337 > sp_P08183_MDR1_HUMAN_TMD_2 690 1016 > sp_Q9NRK6_ABCB10_HUMAN_TMD_1 151 472 > sp_O95342_ABCB11_HUMAN_TMD_1 41 362 > sp_O95342_ABCB11_HUMAN_TMD_2 734 1057 > sp_Q03518_TAP1_HUMAN_TMD_1 1 355 > sp_Q03519_TAP2_HUMAN_TMD_1 1 312 > sp_P21439_MDR3_HUMAN_TMD_1 35 371 > sp_P21439_MDR3_HUMAN_TMD_2 734 1016 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCB5.faa tr_Q6XFQ5_ABCB5_HUMAN_TMD_1 226 551 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCB6.faa sp_Q9NP58_ABCB6_HUMAN_TMD_1 7 226 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCB6.faa sp_Q9NP58_ABCB6_HUMAN_TMD_2 363 568 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCB7.faa sp_O75027_ABCB7_HUMAN_TMD_1 122 427 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCB8.faa sp_Q9NUT2_ABCB8_HUMAN_TMD_1 125 336 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCB9.faa sp_Q9NP78_ABCB9_HUMAN_TMD_1 1 450 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC1.faa sp_P33527_MRP1_HUMAN_TMD_0 16 212 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC1.faa sp_P33527_MRP1_HUMAN_TMD_1 301 633 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC1.faa sp_P33527_MRP1_HUMAN_TMD_2 949 1268 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC10.faa tr_Q5T3U5_ABCC10_HUMAN_TMD_0 48 210 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC10.faa tr_Q5T3U5_ABCC10_HUMAN_TMD_1 264 548 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC10.faa tr_Q5T3U5_ABCC10_HUMAN_TMD_2 852 1081 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC11.faa tr_Q96J66_ABCC11_HUMAN_TMD_1 143 458 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC11.faa tr_Q96J66_ABCC11_HUMAN_TMD_2 785 1094 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC12.faa tr_Q96J65_ABCC12_HUMAN_TMD_1 107 418 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC12.faa tr_Q96J65_ABCC12_HUMAN_TMD_2 776 1073 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC2.faa sp_Q92887_MRP2_HUMAN_TMD_0 10 203 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC2.faa sp_Q92887_MRP2_HUMAN_TMD_1 298 586 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC2.faa sp_Q92887_MRP2_HUMAN_TMD_2 961 1248 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC3.faa sp_O15438_MRP3_HUMAN_TMD_0 17 210 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC3.faa sp_O15438_MRP3_HUMAN_TMD_1 283 577 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC3.faa sp_O15438_MRP3_HUMAN_TMD_2 950 1236 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC4.faa sp_O15439_MRP4_HUMAN_TMD_1 71 393 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC4.faa sp_O15439_MRP4_HUMAN_TMD_2 687 1018 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC5.faa sp_O15440_MRP5_HUMAN_TMD_1 159 467 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC5.faa sp_O15440_MRP5_HUMAN_TMD_2 837 1139 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC6.faa sp_O95255_MRP6_HUMAN_TMD_0 16 206 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC6.faa sp_O95255_MRP6_HUMAN_TMD_1 287 578 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC6.faa sp_O95255_MRP6_HUMAN_TMD_2 971 1071 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC7.faa ABCC7 TMD_1 64 346 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC7.faa ABCC7 TMD_2 839 1168 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC8.faa sp_Q09428_ABCC8_HUMAN_TMD_0 9 209 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC8.faa sp_Q09428_ABCC8_HUMAN_TMD_1 281 616 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC8.faa sp_Q09428_ABCC8_HUMAN_TMD_2 986 1317 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC9.faa sp_O60706_ABCC9_HUMAN_TMD_0 8 208 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC9.faa sp_O60706_ABCC9_HUMAN_TMD_1 327 616 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCC9.faa sp_O60706_ABCC9_HUMAN_TMD_2 961 1168 > sp_P33897_ABCD1_HUMAN NO PREDICTED 94 386 (SWISSPROT) > sp_Q9UBJ2_ABCD2_HUMAN NO PREDICTED 107 399 (SWISSPROT) > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCD3.faa tr_Q9H529_ABCD3_HUMAN_TMD_1 105 348 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCD4.faa sp_O14678_ABCD4_HUMAN_TMD_1 21 310 > sp_P61221_ABCE1_HUMAN NO PREDICTED > sp_Q8NE71_ABCF1_HUMAN NO PREDICTED > sp_Q9UG63_ABCF2_HUMAN NO PREDICTED > tr_Q96GS8_ABCF3_HUMAN NO PREDICTED > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCG1.faa sp_P45844_ABCG1_HUMAN_TMD_1 402 678 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCG2.faa sp_Q9UNQ0_ABCG2_HUMAN_TMD_1 374 655 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCG4.faa sp_Q9H172_ABCG4_HUMAN_TMD_1 371 646 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCG5.faa sp_Q9H222_ABCG5_HUMAN_TMD_1 365 651 > python print_fasta_index.py ../ABC_paper_1/ABC_fasta/fasta/ABCG8.faa sp_Q9H221_ABCG8_HUMAN_TMD_1 423 673