#!/bin/csh
#$ -S /bin/csh
#$ -o /alto3/home/libusha/ABC_bp_runs_new/bp_files
#$ -e /alto3/home/libusha/ABC_bp_runs_new/bp_files
#$ -cwd
#$ -r y
#$ -j y
#$ -l diva1=1G,diva2=1G,scratch=1G,
#$ -l o64=true
#$ -p -4
#$ -t 1-2


set tasks= ('CFTR_tmd1' 'CFTR_tmd2')

set input = $tasks[$SGE_TASK_ID]
setenv MODPIPEBASE /diva1/home/ModPipe/SVN/
mkdir -p /scratch/libusha/$input
cp /alto3/home/libusha/ABC_bp_runs_new/bp_files/$input.faa /scratch/libusha/$input
cp /alto3/home/libusha/ABC_bp_runs_new/py_files/${input}_bp.py /scratch/libusha/$input
/diva2/home/eashwar/programs/ModPipe/aux/CopyFile -i /netapp/database/uniprot/sequences/uniprot90.hdf5 -o /scratch/libusha/uniprot_Aug.hdf5
cd /scratch/libusha/$input

echo "Running"

/diva1/home/modeller/modCVS ${input}_bp.py
/diva2/home/eashwar/programs/ModPipe/aux/CopyFile -i /scratch/libusha/$input/$input.uni90.faa -o /alto3/home/libusha/ABC_bp_runs_new/bp_files/$input.uni90.faa
/diva2/home/eashwar/programs/ModPipe/aux/CopyFile -i /scratch/libusha/$input/$input.uni90.prf -o /alto3/home/libusha/ABC_bp_runs_new/bp_files/$input.uni90.prf