MODELLER 6a, Apr 22, 2000

     PROTEIN STRUCTURE MODELLING BY SATISFACTION OF SPATIAL RESTRAINTS

                                                                 
                     Copyright(c) 1989-2000 Andrej Sali          
                            All Rights Reserved                  
                                                                 
                            Written by A. Sali                   
                 with help from R. Sanchez, A. Badretdinov,      
            A. Fiser, F. Melo, J.P. Overington, E. Feyfant, and  
                              M. Marti-Renom                     
                   Rockefeller University, New York, USA         
                     Harvard University, Cambridge, USA          
                 Imperial Cancer Research Fund, London, UK       
             Birkbeck College, University of London, London, UK  


Kind, OS, HostName, Kernel, Processor: 4, Linux gralla.rockefeller.edu 2.2.12-20smp i686
Date and time of compilation         : 2000/04/29  20:19:04
Job starting time (YY/MM/DD HH:MM:SS): 2000/11/22  17:09:11.794


Dynamically allocated memory at         amaxseq [B,kB,MB]:        28593      27.923     0.027
TOP_________>     2    2 READ_ALIGNMENT FILE = 'p450_1eupA.ali', ALIGN_CODES = 'AL;
                      L' 
 
openf5__224_> Open       11  OLD  SEQUENTIAL  p450_1eupA.ali

Dynamically allocated memory at         amaxseq [B,kB,MB]:        33379      32.597     0.032

Dynamically allocated memory at         amaxbnd [B,kB,MB]:      6139395    5995.503     5.855
openf5__224_> Open       11  OLD  SEQUENTIAL  p450_1eupA.ali

Read the alignment from file       : p450_1eupA.ali
Total number of alignment positions:   419

  #  Code        #_Res #_Segm PDB_code    Name
-------------------------------------------------------------------------------
  1       P450     419      1        P450 
  2      1eupA     403      1        1eup 
TOP_________>     3    3 ALIGN READ_WEIGHTS = ON, INPUT_WEIGHTS_FILE  = 'p450_1eup;
                      A.wgt' 
 

Dynamically allocated memory at         amaxbnd [B,kB,MB]:     13294239   12982.660    12.678
openf5__224_> Open       11  OLD  SEQUENTIAL  ${MODINSTALL6a}/modlib//as1.sim.mat
rdrrwgh_268_> Number of residue types:       20
openf5__224_> Open       11  OLD  SEQUENTIAL  p450_1eupA.wgt

Pairwise dynamic programming alignment (ALIGN):
  Residue-residue metric   : ${MODINSTALL6a}/modlib//as1.sim.mat
  Diagonal                 :          100
  Overhang                 :            0
  Maximal gap length       :       999999
  Local alignment          :            F
  MATRIX_OFFSET (local aln):       0.0000
  Alignment block          :            1
  Gap introduction penalty :    -900.0000
  Gap extension penalty    :     -50.0000
  Length of alignment      :          428
  Score                    :  348774.5300
TOP_________>     4    4 WRITE_ALIGNMENT FILE = 'p450_1eupA_align.ali', ALIGNMENT_;
                      FORMAT = 'PIR' 
 
openf5__224_> Open       14  UNKNOWN  SEQUENTIAL  p450_1eupA_align.ali

Dynamically allocated memory at          finish [B,kB,MB]:     13294239   12982.660    12.678
Starting time                                            : 2000/11/22  17:09:11.794
Closing time                                             : 2000/11/22  17:09:15.072
Total CPU time [seconds]                                 :       0.00