MODELLER 7v7, Sep 12, 2004 09:15pm

     PROTEIN STRUCTURE MODELLING BY SATISFACTION OF SPATIAL RESTRAINTS

                                                                   
                     Copyright(c) 1989-2004 Andrej Sali            
                            All Rights Reserved                    
                                                                   
                             Written by A. Sali                    
                               with help from                      
           B. Webb, M.S. Madhusudhan, M-Y. Shen, M.A. Marti-Renom, 
                     N. Eswar, F. Alber, B. Oliva, A. Fiser,       
                    R. Sanchez, B. Yerkovich, A. Badretdinov,      
                      F. Melo, J.P. Overington, E. Feyfant         
                 University of California, San Francisco, USA      
                    Rockefeller University, New York, USA          
                      Harvard University, Cambridge, USA           
                   Imperial Cancer Research Fund, London, UK       
              Birkbeck College, University of London, London, UK   


Kind, OS, HostName, Kernel, Processor: 4, Linux synth.compbio.ucsf.edu 2.6.8-1.521smp i686
Date and time of compilation         : 09/12/2004 21:24:59
Job starting time (YY/MM/DD HH:MM:SS): 2004/09/17  19:42:01.652

mkapsa__293W> No TOPOLOGY_LIB is in memory. Use READ_TOPOLOGY to read one.
iup2crm_280W> No TOPOLOGY_LIB in memory or assigning a BLK residue.
              Default CHARMM atom type assigned:  N -->  N
              This message is written only for the first such atom.

Pairwise dynamic programming alignment (ALIGN2D):
  Residue-residue metric   : ${MODINSTALL7v7}/modlib//as1.sim.mat
  Diagonal                 :          100
  Overhang                 :            0
  Maximal gap length       :       999999
  Local alignment          :            F
  MATRIX_OFFSET (local aln):       0.0000
  FIX_OFFSETS              :      0.0  1000.0  2000.0  3000.0  4000.0
  N_SUBOPT                 :            1
  SUBOPT_OFFSET            :       2.0000
  Alignment block          :            1
  Gap introduction penalty :    -900.0000
  Gap extension penalty    :     -50.0000
  Gap diagonal penalty     :       0.0000
  Structure gap penalties  :    0.350   1.200   0.900   1.200   0.600   8.600   1.200   0.000
  Length of alignment      :          165
  Score                    :   86066.6563

Dynamically allocated memory at          finish [B,kB,MB]:      5420413    5293.372     5.169
Starting time                                            : 2004/09/17  19:42:01.652
Closing time                                             : 2004/09/17  19:42:08.197
Total CPU time [seconds]                                 :       6.52