Index

A

add() (mdt.features.Cluster method) add_alignment() (mdt.Table method) add_alignment_witherr() (mdt.Table method) AlphaContent (class in mdt.features) AlphaDihedral (class in mdt.features) Angle (class in mdt.features) angle_classes (mdt.Library attribute) AngleType (class in mdt.features) atom_classes (mdt.Library attribute)

AtomAccessibility (class in mdt.features) AtomBondSeparation (class in mdt.features) AtomDistance (class in mdt.features) AtomTable (class in mdt.features) AtomType (class in mdt.features) AverageGapDistance (class in mdt.features) AverageNeighborhoodDifference (class in mdt.features) AverageResidueAccessibility (class in mdt.features)

B

Bin (class in mdt) bins (mdt.Feature attribute) bond_classes (mdt.Library attribute)

BondClasses (class in mdt) BondLength (class in mdt.features) BondType (class in mdt.features)

C

Chi1Class (class in mdt.features) Chi1Dihedral (class in mdt.features) Chi2Class (class in mdt.features) Chi2Dihedral (class in mdt.features) Chi3Class (class in mdt.features) Chi3Dihedral (class in mdt.features) Chi4Class (class in mdt.features)

Chi4Dihedral (class in mdt.features) Chi5Class (class in mdt.features) clear() (mdt.Table method) close() (mdt.Table method) Cluster (class in mdt.features) copy() (mdt.Table method)

D

Dihedral (class in mdt.features) dihedral_classes (mdt.Library attribute)

DihedralType (class in mdt.features) Double (in module mdt)

E

entropy() (mdt.TableSection method) entropy_full() (mdt.Table method)

entropy_hx() (mdt.Table method) exp_transform() (mdt.Table method)

F

Feature (class in mdt) features (mdt.TableSection attribute) FileFormatError

Float (in module mdt) FractionalAtomAccessibility (class in mdt.features)

G

GapDistance (class in mdt.features)

get_array_view() (mdt.Table method)

H

hbond_classes (mdt.Library attribute) HydrogenBondAcceptor (class in mdt.features) HydrogenBondCharge (class in mdt.features)

HydrogenBondClasses (class in mdt) HydrogenBondDonor (class in mdt.features) HydrogenBondSatisfaction (class in mdt.features)

I

ifeat (mdt.Feature attribute) index() (mdt.Source method) Int16 (in module mdt) Int32 (in module mdt)

Int8 (in module mdt) integrate() (mdt.Table method) inverse_transform() (mdt.Table method)

L

Library (class in mdt) linear_transform() (mdt.Table method)

log_transform() (mdt.Table method)

M

MainchainConformation (class in mdt.features) make() (mdt.Table method) mdt (module)

mdt.features (module) MDTError mean_stdev() (mdt.TableSection method)

N

n_protein_pairs (mdt.Table attribute) n_proteins (mdt.Table attribute)

NeighborhoodDifference (class in mdt.features) normalize() (mdt.Table method)

O

offset (mdt.Feature attribute) (mdt.TableSection attribute) offset_min() (mdt.Table method) OmegaClass (class in mdt.features)

OmegaDihedral (class in mdt.features) OmegaDihedralDifference (class in mdt.features) open_alignment() (mdt.Table method)

P

pdf (mdt.Table attribute) periodic (mdt.Feature attribute) PhiClass (class in mdt.features) PhiDihedral (class in mdt.features)

PhiDihedralDifference (class in mdt.features) PsiClass (class in mdt.features) PsiDihedral (class in mdt.features) PsiDihedralDifference (class in mdt.features)

R

RadiusOfGyration (class in mdt.features) range (mdt.Bin attribute) read() (mdt.BondClasses method) (mdt.HydrogenBondClasses method) (mdt.Table method) (mdt.TupleClasses method) read_hdf5() (mdt.Table method) reshape() (mdt.Table method) ResidueAccessibility (class in mdt.features)

ResidueDistance (class in mdt.features) ResidueDistanceDifference (class in mdt.features) ResidueGroup (class in mdt.features) ResidueIndexDifference (class in mdt.features) ResidueType (class in mdt.features)

S

sample_size (mdt.Table attribute) SequenceIdentity (class in mdt.features) SequenceLength (class in mdt.features) shape (mdt.TableSection attribute) SidechainBiso (class in mdt.features) smooth() (mdt.Table method)

Source (class in mdt) sum() (mdt.Source method) (mdt.TableSection method) super_smooth() (mdt.Table method) symbol (mdt.Bin attribute) symmetric (mdt.Table attribute)

T

Table (class in mdt) TableSection (class in mdt) tuple_classes (mdt.Library attribute) TupleAngle1 (class in mdt.features) TupleAngle2 (class in mdt.features) TupleClasses (class in mdt)

TupleDihedral1 (class in mdt.features) TupleDihedral2 (class in mdt.features) TupleDihedral3 (class in mdt.features) TupleDistance (class in mdt.features) TupleType (class in mdt.features), [1]

U

uniform_bins() (in module mdt) UnsignedInt16 (in module mdt)

UnsignedInt32 (in module mdt) UnsignedInt8 (in module mdt)

V

version (in module mdt)

version_info (in module mdt)

W

write() (mdt.Table method) write_2dsplinelib() (in module mdt) write_anglelib() (in module mdt) write_asgl() (mdt.Table method) write_bondlib() (in module mdt)

write_hdf5() (mdt.Table method) write_improperlib() (in module mdt) write_splinelib() (in module mdt) write_statpot() (in module mdt)

X

XRayResolution (class in mdt.features)