Hi Brinda,


thanks for inviting us to give feedback - excellent work and nice images.

1. I miss browsing the structures, I 'abused' the search page to query for "" resulting in 36 depositions. But you need to be on the query page to search with an empty string, which is too cumbersome for the average user...

2. https://pdb-dev-beta.wwpdb.org/solrsearch.html?query=trans does not show any results, although I would expect to see this deposition ('trans'ferase)

PDBDEV_00000014: Structure of 16S rRNA complexed with methyltransferase A small subunit Integrative Modeling of Biomolecular Complexes: HADDOCKing with Cryo-Electron Microscopy Data.

3. In this query results table a small complex preview image would be nice

4. Please add release date to query results table, so one can sort to find the latest entries for the particular search he/she is concerned with (medium prio).

5. Deposition 27 misses the version of iSpot used, both on the page and in the cif file (low prio)





Best, Juergen


On 11/02/2020 13:12, Bonvin, A.M.J.J. (Alexandre) wrote:
Very nice Brinda!

One comment from my group was about the color design with the combination of green/black/blue… Not the best.
You could consider going more for a RCSB type color palette.

Cheers
Alexandre


On 4 Feb 2020, at 18:26, Brinda Vallat <brinda.vallat@rcsb.org> wrote:

Hello Everyone, 

We are happy to inform you that the beta version of a  new and improved PDB-Dev website is now available at https://pdb-dev-beta.wwpdb.org. 

In addition to providing dynamic and responsive web pages, the PDB-Dev web interface now includes two new features. 

1. We provide a new search service that facilitates the retrieval of structures archived in PDB-Dev. Simple text search using macromolecular names, entry identifiers, experimental data types, author names, citation, software and several other keywords are now supported. Boolean search is also supported. Search results can be downloaded as csv or excel files.

2. We have individual entry pages for released entries. The entry pages highlight key details about the structure and provide links to related data residing in other repositories as well as the ability to download the structure. 

We request you to review the beta site and provide us your feedback. We plan to move the beta site into production by the end of February, 2020. Please send any comments or suggestions by February 24th to pdb-dev@mail.wwpdb.org.

Thank you. 

Best regards,

The PDB-Dev Team

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 Dr. Alexandre M.J.J Bonvin            | Professor of Computational Structural Biology 
 Scientific Director Bijvoet Centre for Biomolecular Reseach 
 Faculty of Science, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands
 Phone: +31-30-2533859 / 2652      |   Email: a.m.j.j.bonvin@uu.nl
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