IMP-dev March 2008

imp-dev@salilab.org

6 participants
22 discussions

More small patches
by Daniel Russel 04 Mar '08

04 Mar '08

First, there were some incorrect indexes in MD (not a problem in practice). Second I loosed the tolerances on one of the tests since it was often outside the tolerance if anything changed with the state of the random number generator. I added a call to seed the random number generator with the current time and a comment about how to set the seed if you prefer something else.

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Various small changes
by Daniel Russel 04 Mar '08

04 Mar '08

Add operator[] to Vector3D as that is kind of customary in C++ Add a few methods to randomize particles in the XYZdecorator Use the inactive particle exception in particle.h Make some clarifications in the documents about what show and other things should do. And remove the name from the Optimization state since it is never used. We may want to put the name into object so that everything has it, but the current system with a few random objects having it is kind of awkward. Add a singleton score function that applies a unary function to the value of a single attribute.

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IMP-dev March 2008