Containers now have methods IMP::SingletonContainer::evaluate(),
IMP::PairContainer::evaluate(), IMP::SingletonContainer::apply() and
IMP::PairContainer::apply(). Using these can be significantly faster
than looping over the particles externally. Similarly, there is
IMP::SingletonScore::evaluate(),
IMP::PairScore::evaluate(),IMP::SingletonModifier::apply(),
IMP::PairModifier::apply().
The decorator functions have been renamed to
IMP::Decorator::setup_particle(), IMP::Decorator::decorate_particle()
and IMP::Decorator::particle_is_instance(). A shell script tools/
update-decorators is provided which updates the names in all code in
subdirectories of the current directory. Please backup things first.
a function, IMP::Restraint::safe_evaluate() has been added to be used
when requesting the value of restraints outside of the
IMP::Model::evaluate().