On 02/21/2012 08:36 AM, Davide Baù wrote:
> On Feb 21, 2012, at 5:23 PM, Ben Webb wrote:
>> Is there a reason this machine is years out of date? (The latest
>> update for RHEL 5 is 5.7.) It seems entirely possible that a bug in
>> one of the system headers was fixed in the interim.
> Actually I don't know. I will contact the informatics department to
> ask if it is possible to update the system (unfortunately we can
> just "use" the cluster.)
You can point them to …
[View More]http://en.wikipedia.org/wiki/RHEL#Version_history
5.3 has been obsolete since 5.4 was released in September 2009.
> I got a error on the algebra module: Errors building:
> build/src/IMP.algebra.py. It's curious that there's a red box on the
> algebra module on Mac while it compiled with no errors on my Mac.
It's a different Mac (32-bit code is built on a 10.4 - Tiger - machine).
Chances are your machine is more similar to our Snow Leopard 64-bit
build machine. I've added more descriptive labels to this page, which
should show up tomorrow.
...
> /project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:243:
> Error: Template 'GridD' undefined.
> /project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:244:
> Error: Template 'GridD' undefined.
> /project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:245:
> Error: Template 'GridD' undefined.
> /project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:246:
> Error: Template 'GridD' undefined.
> /project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:247:
> Error: Template 'GridD' undefined.
> /project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:248:
> Error: Template 'GridD' undefined.
> /project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:249:
Odd. The SWIG file should be parsing algebra's GridD.h header, which
defines that template. But Daniel did make some changes there recently -
are you sure you don't have a mismatch of versions somewhere (perhaps an
older version of GridD.h paired with a newer SWIG interface)? I'd
suggest a fresh checkout to be sure.
Ben
--
ben(a)salilab.org http://salilab.org/~ben/
"It is a capital mistake to theorize before one has data."
- Sir Arthur Conan Doyle
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