Just FYI, latest IMP in git should now configure and build successfully
if your 'python' binary is actually Python 3 (as with any nonstandard
Python, you may need to set the cmake PYTHON_INCLUDE_DIR and
PYTHON_LIBRARY variables to tell it where the associated headers and
library are).
Note that IMP itself doesn't fully work yet (there are still some issues
with string typemaps, most likely because in Python 3 all strings are
Unicode).
The plan is to have our Python code run both in Python 2 and Python 3
(as opposed to maintaining a Python 2 version and a Python 3 version).
This isn't too onerous since we don't support ancient versions of Python
(older than 2.6) any more anyway.
If you have Python code in IMP, I've modified it to work with both
Python 2 and 3. You'll notice the major change is that "print" is no
longer a statement in Python 3 (it's a function). So you have to say
print("foo") rather than print "foo". I added "from __future__ import
print_function" in IMP Python modules that use print so this will behave
identically in Python 2 and 3. Other differences are fairly minor (e.g.
'xrange' is no more - use 'range' instead; some functions return
iterators rather than lists in Python 3 so you have to wrap them with
list() if you explicitly want the Python 2 behavior).
Ben
--
ben(a)salilab.org http://salilab.org/~ben/
"It is a capital mistake to theorize before one has data."
- Sir Arthur Conan Doyle
IMP 2.3.1 is now available. This is a bug fix and minor update release.
Most notably two complete modeling examples that use the IMP::pmi module
are now fully functional: modeling of the Nup84 subcomplex of the
nuclear pore complex and of RNA Polymerase II.
See https://github.com/salilab/imp/releases/tag/2.3.1 for the full
change log.
Check it out at http://integrativemodeling.org/
Ben
--
ben(a)salilab.org http://salilab.org/~ben/
"It is a capital mistake to theorize before one has data."
- Sir Arthur Conan Doyle
