- IMP-dev - salilab.org

show-changes
by Daniel Russel 25 Jan '12

25 Jan '12

I added a little script to IMP tools called show-changes that shows changes in IMP (as announced in the history file) that have occurred since you last updated. The idea is to help people get an idea if there are any changes that would require updating their code before doing svn update so you don't have to spend time updating your code when you are in the middle of something else. And I hope to encourage people to read the change log so they have a sense of what is happening in IMP. Do ./… [View More]

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For emacs users
by Daniel Russel 07 Jan '12

07 Jan '12

I added emacs config code to a new emacs page in the wiki that: - turns characters beyond the 80 character limit red - removes blank spaces and the ends of lines when you save.

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Improved nightly build results
by Daniel Russel 16 Dec '11

16 Dec '11

The nightly build page is much less used than it should be (I don't think anyone other than Ben or I looks at it regularly). This is, in part, I think because it is hard to extract the useful information from it. As i think it would be really nice to have more people looking at it after they submit changes and be able to get the information they want out more easily, I started a wiki page on ideas for improvement < https://salilab.org/imp/wiki/nightly>. Please add/change ideas.

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No more IMP releases?
by Daniel Russel 16 Dec '11

16 Dec '11

Now that Ben has made the nightly builds available online it might make sense to move away from our current nominally release based distribution model to one based on just making the actively developed version of IMP more readily available. To make it clearer what I mean, the model would look something like: - some set of current and historical nightly test results are publicly available on line such that one can - check how the nightly tests went for a given night - if they were … [View More]

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Using git as an svn client
by Daniel Russel 09 Dec '11

09 Dec '11

I've been using git as my svn client for a few weeks now and can quite recommend it for anyone who is - writing large amounts of for IMP or an IMP module that is shared with others - writing code that sits in modules but is not committed back to svn for long periods The advantages of using git as your svn client instead of straight svn include - you can commit files locally (without sending them to the SVN repository) so that you have backups and tracking of your changes without subjecting … [View More]

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Moving display up in the world
by Daniel Russel 01 Dec '11

01 Dec '11

I'd like to move the display module up so that core and atom depend on it (rather than vice versa). This will have various nice effects such as - algebra and kernel tests that use display don't require building almost all of IMP - display can be used in core and atom C++ code to aid in debugging - code to display various decorators goes with the decorators - display now looks like statistics and algebra in that it provides low level services that can be used by many other modules The … [View More]

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Maximum number of restraints
by Davide Baù 29 Nov '11

29 Nov '11

Hi, is it possible to set a maximum number of restraints to a particle? Thanks, Davide

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algebra::get_unit_bounding_box_d()
by Daniel Russel 23 Nov '11

23 Nov '11

algebra::get_unit_bounding_box_d() currently returns a bounding box with diameter 1 (that is, one reaching from 0 to 1 in each coordinate). This isn't documented and is kind of inconsistent with algebra::get_unit_sphere_d() which returns a sphere with radius 1. I'd like to change the former to be consistent (so get_bounding_box(get_unit_sphere_d()) == get_unit_bounding_box_d()). It doesn't look like anything in IMP depends on the old behavior, but it is used in various tests and examples (at … [View More]

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Documentation pages
by Davide Baù 21 Nov '11

21 Nov '11

Hi, is there a problem with the online documentation? It seems I can access only the example pages. Thanks! Davide

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breaking changes to RMF
by Daniel Russel 09 Nov '11

09 Nov '11

I'm making some breaking changes to RMF files as part of a cleanup. I think they are all in obscure areas that no one is using yet, but I just want to make sure that no one is surprised: - bonds will be stored using a different scheme. As a result, existing bonds in the file will be ignored. Adding backward compatibility support for this would be pretty easy. - the API for storing/extracting bonds has changed (the old API is still there, just no longer documented and now deprecated). There is … [View More]

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