On 02/21/2012 08:36 AM, Davide Baù wrote: > On Feb 21, 2012, at 5:23 PM, Ben Webb wrote: >> Is there a reason this machine is years out of date? (The latest >> update for RHEL 5 is 5.7.) It seems entirely possible that a bug in >> one of the system headers was fixed in the interim. > Actually I don't know. I will contact the informatics department to > ask if it is possible to update the system (unfortunately we can > just "use" the cluster.)
You can point them to http://en.wikipedia.org/wiki/RHEL#Version_history 5.3 has been obsolete since 5.4 was released in September 2009.
> I got a error on the algebra module: Errors building: > build/src/IMP.algebra.py. It's curious that there's a red box on the > algebra module on Mac while it compiled with no errors on my Mac.
It's a different Mac (32-bit code is built on a 10.4 - Tiger - machine). Chances are your machine is more similar to our Snow Leopard 64-bit build machine. I've added more descriptive labels to this page, which should show up tomorrow.
... > /project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:243: > Error: Template 'GridD' undefined. > /project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:244: > Error: Template 'GridD' undefined. > /project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:245: > Error: Template 'GridD' undefined. > /project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:246: > Error: Template 'GridD' undefined. > /project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:247: > Error: Template 'GridD' undefined. > /project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:248: > Error: Template 'GridD' undefined. > /project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:249:
Odd. The SWIG file should be parsing algebra's GridD.h header, which defines that template. But Daniel did make some changes there recently - are you sure you don't have a mismatch of versions somewhere (perhaps an older version of GridD.h paired with a newer SWIG interface)? I'd suggest a fresh checkout to be sure.
Ben