On Feb 2, 2009, at 1:39 AM, Daniel Russel wrote:
> > On Feb 2, 2009, at 1:23 AM, Keren Lasker wrote: > >> I see your point, but when you write a pdb file after reading it - >> sometime you want to keep the same atom indexes for analysis - can >> it be an option when reading a pdb file to store the indexes as >> well ? ( like in modeller) > Easy enough to add although it might be good enough to ensure that > the hierarchy is traversed for writing in the same order in which it > is read from the file. > > Then the numbers will be the same and you don't have the issue of > what to do with invalid indexes. This is true if you do not read two pdbs separately to the same model and ask for the indexes of the second one. > > >> >> On Feb 2, 2009, at 1:21 AM, Daniel Russel wrote: >> >>> It is not currently stored since the atom indices are not >>> meaningful and would have to be recomputed each time you add or >>> remove an atom from the model. >>> >>> On Feb 2, 2009, at 12:41 AM, Keren Lasker wrote: >>> >>>> >>>> _______________________________________________ >>>> IMP-dev mailing list >>>> IMP-dev@salilab.org >>>> https://salilab.org/mailman/listinfo/imp-dev >>> >>> _______________________________________________ >>> IMP-dev mailing list >>> IMP-dev@salilab.org >>> https://salilab.org/mailman/listinfo/imp-dev >> >> _______________________________________________ >> IMP-dev mailing list >> IMP-dev@salilab.org >> https://salilab.org/mailman/listinfo/imp-dev > > _______________________________________________ > IMP-dev mailing list > IMP-dev@salilab.org > https://salilab.org/mailman/listinfo/imp-dev