BUT - if we put a lot of tools in same folder, we will have a total mess with hundreds of files in the same place. We cannot make subfolders due to the automated scripts, how about instead we'll start a convention of naming folders like "statistics_clustering", "statistics_som", "statistics_misc", etc. This is instead of having subfolders "statistics/clustering" "statistics/som", so the automated script would work as is. It would also improve build times due to smaller dependencies constraints.

On Mon, Jun 18, 2012 at 5:31 AM, Yannick Spill <yannick@salilab.org> wrote:

Hi list,

In the light of my recent discovery of the statistics module in imp, I was wondering if some of you would be interested in an implementation of self-organizing maps (SOM). They are a generalization of principal components analysis to nonlinear models.
http://en.wikipedia.org/wiki/Self-organizing_map
There's a shortcut for us to have it in IMP. It's called GPLVM, and is a probabilistic SOM based on gaussian processes. Is that something that would interest anyone?

Yannick
_______________________________________________
IMP-dev mailing list
IMP-dev@salilab.org
https://salilab.org/mailman/listinfo/imp-dev

--
Barak