Yes, the directory modules/kernel is present. I have tried to compile the same version on a linux machine. It does not compile either, but with a different error:
> g++ -o build/src/imp_misc_all.os -c -isystem /usr/src/imp/trunk -Wall -Wextra -Wno-deprecated -Winit-self -Wstrict-aliasing=2 -Wcast-align -fno-operator-names -Wmissing-declarations -Wundef -Woverloaded-virtual -O3 -fexpensive-optimizations -ffast-math -ftree-vectorize -ffinite-math-only -fstrict-aliasing -fno-trapping-math -fno-signaling-nans -fno-float-store -Wno-unused -funsafe-loop-optimizations -fno-signed-zeros -freciprocal-math -fassociative-math -fvisibility=hidden -fPIC -DBOOST_ALL_NO_LIB -DIMPMISC_EXPORTS -DGCC_VISIBILITY -Ibuild/include -Ibuild/src build/src/imp_misc_all.cpp > scons: *** [build/src/imp_restrainer_all.os] Error 1 > /usr/src/imp/trunk/build/include/IMP/saxs/Score.h:30: Warning(401): Nothing known about base class 'RefCounted'. Ignored. > scons: building terminated because of errors.
On Oct 4, 2011, at 4:48 PM, Daniel Russel wrote:
> For some reason scons isn't finding most of the module source (at the bottom it thinks there are no modules it can build). Are you sure there is a directory modules/kernel? > > On Oct 4, 2011, at 4:48 AM, Davide Baù wrote: > >> Hi all, >> >> I have a problem trying to compile the latest IMP build (r11272) on a MBP updated to Lion. >> >> I got the latest version of IMP (svn co http://svn.salilab.org/imp/trunk) but I'm not able to compile it (Errors building: tools/imppy.sh). >> >> Does anyone knows if it depends on the IMP version I'm trying to compile? >> Davide >> >>> scons: *** [tools/imppy.sh] KeyError : 'kernel' >>> Traceback (most recent call last): >>> File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/scons-2.0.1/SCons/Action.py", line 1046, in execute >>> result = self.execfunction(target=target, source=rsources, env=env) >>> File "/usr/src/imp/r11272/scons_tools/imppy.py", line 61, in builder_script_file >>> if data.get(env).modules['kernel'].external: >>> KeyError: 'kernel' >>> scons: building terminated because of errors. >>> >>> >>> IMP configuration: >>> boost ='yes' >>> boostlibs ='' >>> boostversion ='104601' >>> boostlibsuffix ='-mt' >>> endian ='little' >>> boost_programoptions='yes' >>> boost_programoptionslibs='boost_program_options-mt' >>> build ='fast' >>> prefix ='/usr' >>> local ='True' >>> pythonpath ='/usr/src/imp/r11272' >>> libpath ='/opt/local/lib' >>> ldlibpath ='/usr/src/imp/r11272' >>> swigpath ='/usr/src/imp/r11272' >>> datapath ='/usr/src/imp/r11272' >>> cxxcompiler ='g++' >>> cxxflags='-isystem /opt/local/include -Os -fno-common -arch i386 -arch x86_64 -Wall -Wextra -Wno-deprecated -Winit-self -Wstrict-aliasing=2 -Wcast-align -fno-operator-names -Wmissing-prototypes -Wundef -Woverloaded-virtual -O3 -fexpensive-optimizations -ffast-math -ftree-vectorize -ffinite-math-only -fstrict-aliasing -fno-trapping-math -fno-signaling-nans -fno-float-store -Wno-unused -funsafe-loop-optimizations' >>> pythoncxxflags ='-isystem /opt/local/include -Os -fno-common -arch i386 -arch x86_64 -Wno-deprecated -Winit-self -Wcast-align -fno-operator-names -Wundef -Woverloaded-virtual -fexpensive-optimizations -ffast-math -ftree-vectorize -ffinite-math-only -fstrict-aliasing -fno-trapping-math -fno-signaling-nans -fno-float-store -Wno-unused -funsafe-loop-optimizations' >>> bincxxflags='-isystem /opt/local/include -Os -fno-common -arch i386 -arch x86_64 -Wall -Wextra -Wno-deprecated -Winit-self -Wstrict-aliasing=2 -Wcast-align -fno-operator-names -Wundef -Woverloaded-virtual -O3 -fexpensive-optimizations -ffast-math -ftree-vectorize -ffinite-math-only -fstrict-aliasing -fno-trapping-math -fno-signaling-nans -fno-float-store -Wno-unused -funsafe-loop-optimizations' >>> shliblinkflags =' -dynamiclib -headerpad_max_install_names' >>> arliblinkflags ='' >>> binlinkflags ='-headerpad_max_install_names' >>> pythonlinkflags =' -bundle -bundle -flat_namespace -undefined suppress -headerpad_max_install_names' >>> rpath ='True' >>> static ='False' >>> pythonsosuffix ='.so' >>> pkgconfig ='True' >>> path ="/opt/local/bin:/opt/local/sbin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/X11/bin:/opt/local/bin:/usr/local/git/bin:/Users/dbau/Work/scripts:/Users/dbau/Work/scripts/ucsf:/Users/dbau/Work/scripts/tools:/Users/dbau/Work/scripts/IMP:/Users/dbau/Scripts:/opt/local/bin:/usr/bin:/bin:/usr/local/git/bin:/usr/src/android-sdk-mac_x86/platforms:/usr/src/android-sdk-mac_x86/tools:/usr/src/android-sdk-mac_x86/platform-tools" >>> python ="python" >>> >>> >>> Enabled dependencies: Boost, Boost.ProgramOptions >>> >>> Disabled modules: em, core, container, saxs, multifit, modules, example_system_local, rmf, atom, em2d >>> >>> Disabled applications: rmf_tools, ligand_score, saxs_tools, Groel, nup84, multifit, em_tools, example_system, rnapii, foxs >>> >>> Errors building: >>> tools/imppy.sh >> >> _______________________________________________ >> IMP-dev mailing list >> IMP-dev@salilab.org >> https://salilab.org/mailman/listinfo/imp-dev > > > _______________________________________________ > IMP-dev mailing list > IMP-dev@salilab.org > https://salilab.org/mailman/listinfo/imp-dev