On 04/25/2011 02:31 PM, Daniel Russel wrote: > - ~drussel/production/hdf5: the version of hdf5 installed on the > cluster is old and has several important differences from more recent > versions. Backporting the hdf5 code looks to be a bit painful and > messy and hdf5 is very easy to build.
Yes, it's trivial to upgrade the version installed on the cluster. You could have simply asked. ;) I will do so.
> - ~drussel/production/bullet: the physics based optimizer, it is not > installed in the cluster - ~drussel/production/CGAL: the geometry > library, it is not installed in the cluster
Both bullet and CGAL are indeed installed on the interactive nodes. You simply need to copy the shared libraries to a suitable shared location if you want to run bullet- or CGAL-enabled IMP on the cluster. For example, the nightly builds already do so: see /salilab/diva1/home/imp/nightly/lib/x86_64-intel8/ for 64-bit DSOs.
Ben